PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553814.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 211aa    MW: 24269.1 Da    PI: 8.8046
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553814.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.81.4e-237481051
                    HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    q tfskRr g++KKA+E+SvLC+a+va+iifss+g+lyey++
  XP_028553814.1  7 QLTFSKRRVGLFKKAHEISVLCGANVALIIFSSKGNLYEYAT 48
                    78**************************************86 PP
2K-box80.73.5e-27771621499
           K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +e l+qe++ Lk++++ Lqr+ Rh++Ge+L++Lsl eLqqLe qLe++lk+iR + n+lll++i elq+kek+l e++ +L++k+ 
  XP_028553814.1  77 QEDLCQEYEELKRKVDALQRSRRHVMGENLDTLSLTELQQLELQLETALKHIRFQMNKLLLDSIAELQRKEKSLLENKIELENKII 162
                     6899******************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MGRGSVQLTF SKRRVGLFKK AHEISVLCGA NVALIIFSSK GNLYEYATNS CMERILERYM  60
RNSYVEKAFP IQEPVSQEDL CQEYEELKRK VDALQRSRRH VMGENLDTLS LTELQQLELQ  120
LETALKHIRF QMNKLLLDSI AELQRKEKSL LENKIELENK IIENNNAIMM AKQMQAKEQG  180
RDQASSSTPP TLLLLNSLST TLPPWMLRPP S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.19e-41MIKC_MADS family protein