PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553862.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 229aa MW: 25480.7 Da PI: 10.044

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.1	2.3e-29	107	163	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsek...AtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ XP_028553862.1 107 PRMRWTTTLHARFVHAVELLGGHESmfgATPKSVLELMDVKDLTLAHVKSHLQMYRT 163 9********************96666**************************7 PP
2	Myb_DNA-binding	49.3	1.2e-15	108	162	1	48
TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWTt ++ ++v+av++lGg+ t+k++ + m k +tl ++ks++q+y+ XP_028553862.1 108 RMRWTTTLHARFVHAVELLGGHesmfgaTPKSVLELMDvKDLTLAHVKSHLQMYR 162 89***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence
MQVEEFFTET TNSMPSPNLS LSISVDSPQP QTELSLSSSS SPPLEELRKA SKSIKGIPIY 60 SNNTSSSNSS FPLLPKMPSY SAQNQYNTTL RSRLMWRLPV RRSMRAPRMR WTTTLHARFV 120 HAVELLGGHE SMFGATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTEKA AASSGQSDGS 180 GEEDLTRDLG FGRLMDSRGS NQTMTVHDMD YTSAKRSNSS RKMDSNHTA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-41	G2-like family protein