PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554068.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 840aa MW: 95941.4 Da PI: 7.9514

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	36	123	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA++vGF vr+s+ ++++n +t+rtfvCs+eg+re++k + ++ +++r+etr+gC+a+++++++++gk++vt+++ +HnH+la XP_028554068.1 36 DFYGTYAENVGFFVRRSTLWTTSKNI-VTRRTFVCSREGFREKKKGA-KEVKSPRPETRIGCQACMTIRLTTNGKYRVTEFVPNHNHSLA 123 6******************97766.************9999.9999**********************************97 PP
2	FAR1	82.5	7.3e-26	165	252	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA ++GF+vr+++++ + + it+r fvCskeg+re++k + ++ +++r+etrtgC a++ ++ +gk++v+++++ HnH+l+ XP_028554068.1 165 EFYNMYAGRMGFTVRRASMTVT-AGDVITRRMFVCSKEGFRERKKGA-KRVKKPRPETRTGCPACMIIRIGPSGKYHVSEFVTYHNHPLS 252 6**************99888.7778************9998.99************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MADIRATTSG LIEEVGSSGW MPTVNMLFDS ENDAYDFYGT YAENVGFFVR RSTLWTTSKN 60 IVTRRTFVCS REGFREKKKG AKEVKSPRPE TRIGCQACMT IRLTTNGKYR VTEFVPNHNH 120 SLATATSIQM LKAKKLRRKA RAARVDLVDD SVKTPEFETE YEAYEFYNMY AGRMGFTVRR 180 ASMTVTAGDV ITRRMFVCSK EGFRERKKGA KRVKKPRPET RTGCPACMII RIGPSGKYHV 240 SEFVTYHNHP LSAPLANDLL ISQNSETGVL DDESGMTDVL MMTPMSTDNS GNIQARGAQD 300 FSLHSVDSKS CLRSKLSKSV LVGDVGATLE YLQKMQDENP SFFYAVQVDE MGSLINFFWA 360 DAKSVMDFKY FGDVVCFDST YKYFGYGRPF AQFIGVNHHK QAVIFGSALL HDESKKSYKW 420 LFDTFKTAMS GKQSKTILTD RSALMTEAIA EMWPGTFHRY CVWHIYQNAL EQLTQAFHGS 480 KTLASDFSRC LFDYEDEEEF LMAWKTMLET YDLKDNQWLA NLFEEREKWA LVYGREAFYA 540 DMKSVQLKDN LSGELKKYLS PETELLNFYE HYNKLLEERR FAELQADAHA SQSARKLPSM 600 RVLRQAADSY TPAAFKMFEK EFELYMDCMI YSCGEIGTVS EYKVTMDEKL KDHFVKFDSL 660 DGSITCSCKK FDFIGIPCHH MLKVLDSRNI KDLPPEYVLK RWRKDAKVVP FSGIYDFPFD 720 GNPQTLSAKR YNYLCRIFSI AASRASKSFD TCVFIENQSD LLMEQVEHIL RVRSIDMPSL 780 ITAPCDRAQN SVESIVTGGF RHDRVNQGSF VGANVNGFLG SRLSHPTMCW GQFPAGPPEQ

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MADIRATTSG LIEEVGSSGW MPTVNMLFDS ENDAYDFYGT YAENVGFFVR RSTLWTTSKN  60
IVTRRTFVCS REGFREKKKG AKEVKSPRPE TRIGCQACMT IRLTTNGKYR VTEFVPNHNH  120
SLATATSIQM LKAKKLRRKA RAARVDLVDD SVKTPEFETE YEAYEFYNMY AGRMGFTVRR  180
ASMTVTAGDV ITRRMFVCSK EGFRERKKGA KRVKKPRPET RTGCPACMII RIGPSGKYHV  240
SEFVTYHNHP LSAPLANDLL ISQNSETGVL DDESGMTDVL MMTPMSTDNS GNIQARGAQD  300
FSLHSVDSKS CLRSKLSKSV LVGDVGATLE YLQKMQDENP SFFYAVQVDE MGSLINFFWA  360
DAKSVMDFKY FGDVVCFDST YKYFGYGRPF AQFIGVNHHK QAVIFGSALL HDESKKSYKW  420
LFDTFKTAMS GKQSKTILTD RSALMTEAIA EMWPGTFHRY CVWHIYQNAL EQLTQAFHGS  480
KTLASDFSRC LFDYEDEEEF LMAWKTMLET YDLKDNQWLA NLFEEREKWA LVYGREAFYA  540
DMKSVQLKDN LSGELKKYLS PETELLNFYE HYNKLLEERR FAELQADAHA SQSARKLPSM  600
RVLRQAADSY TPAAFKMFEK EFELYMDCMI YSCGEIGTVS EYKVTMDEKL KDHFVKFDSL  660
DGSITCSCKK FDFIGIPCHH MLKVLDSRNI KDLPPEYVLK RWRKDAKVVP FSGIYDFPFD  720
GNPQTLSAKR YNYLCRIFSI AASRASKSFD TCVFIENQSD LLMEQVEHIL RVRSIDMPSL  780
ITAPCDRAQN SVESIVTGGF RHDRVNQGSF VGANVNGFLG SRLSHPTMCW GQFPAGPPEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-113	FAR1 family protein