PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554131.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 375aa MW: 40986 Da PI: 4.764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	9.1e-13	175	226	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr l+P++ + ++ + a+i A+e++++L+ XP_028554131.1 175 QRMTHIAVERNRRRQMNEHLRVLRALMPTS---YVQRGDQASIIGGAIEFVRELE 226 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MKMDEKEVED NYSAHQPTAF AALDATDQNA AAAAAGGSIE MVDYMLNTSP APPPPHLSFA 60 EVMQFADFRP KIHAQPQTQV SGDVVDVESC FFKFPSLPSP SPLPYDEIDG GDDQDLEEEE 120 AHRFSDLNEA ATATAVAAGS SVQEIGGGGG VDQGKSGSRR KRGRSMKTSE EVESQRMTHI 180 AVERNRRRQM NEHLRVLRAL MPTSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL 240 YGSGAVDASL PLPIPQPAPP LPAFFPQLPL AGVDTSDGSV GLREDMAENK SPLADIEVRL 300 LGLDAMIKIL SRRRPGQLLR TIAALEDMQL SILHTNITTI EQTVLYSFNV KTDHGRDELH 360 CAGDCQLSSA NTWLH

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MKMDEKEVED NYSAHQPTAF AALDATDQNA AAAAAGGSIE MVDYMLNTSP APPPPHLSFA  60
EVMQFADFRP KIHAQPQTQV SGDVVDVESC FFKFPSLPSP SPLPYDEIDG GDDQDLEEEE  120
AHRFSDLNEA ATATAVAAGS SVQEIGGGGG VDQGKSGSRR KRGRSMKTSE EVESQRMTHI  180
AVERNRRRQM NEHLRVLRAL MPTSYVQRGD QASIIGGAIE FVRELEQLLQ CLESQKRRRL  240
YGSGAVDASL PLPIPQPAPP LPAFFPQLPL AGVDTSDGSV GLREDMAENK SPLADIEVRL  300
LGLDAMIKIL SRRRPGQLLR TIAALEDMQL SILHTNITTI EQTVLYSFNV KTDHGRDELH  360
CAGDCQLSSA NTWLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	187	RMTHIAVERNRR
2	236	240	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	7e-73	bHLH family protein