PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554170.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 445aa MW: 49438.1 Da PI: 9.5726

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	73	93	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_028554170.1 73 CEICNKGFQRDQNLQLHRRGH 93 *******************88 PP
2	zf-C2H2	11.4	0.00098	147	169	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_028554170.1 147 WKCDKCSKKYAVQSDWKAHSKIC 169 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MKGLIIPPQL QLLEENMSNL TSASGEASVS SNNQNPNPPS SKKKRNLPGN PDPEAEVIAL 60 SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKK VYICPEVTCV 120 HHDASRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYRCDCGT 180 LFSRRDSFIT HRAFCDALAE ESARAITANP LVSHHPLLFP APPPPPQPPI TLPPQPQFPH 240 LIRSATAEPS QELQELVTLK RETQQPPFNL RQEIPSWLSS QGNNTSPLNY HDLPFSLYAS 300 RMVQENGIPH HLISTPAPAM APAPHMSATA LLQKAAQMGA ISASSKVNAT GLGLSSSHQQ 360 ETTNFHGSAS QSPFLQDLMM KSMPQASLFD DHGRREEGRN GNDGLTRDFL GLRAISQRDL 420 LNMAGIETCM SNSYDNQKKK SWLGN

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MKGLIIPPQL QLLEENMSNL TSASGEASVS SNNQNPNPPS SKKKRNLPGN PDPEAEVIAL  60
SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKK VYICPEVTCV  120
HHDASRALGD LTGIKKHFSR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAE ESARAITANP LVSHHPLLFP APPPPPQPPI TLPPQPQFPH  240
LIRSATAEPS QELQELVTLK RETQQPPFNL RQEIPSWLSS QGNNTSPLNY HDLPFSLYAS  300
RMVQENGIPH HLISTPAPAM APAPHMSATA LLQKAAQMGA ISASSKVNAT GLGLSSSHQQ  360
ETTNFHGSAS QSPFLQDLMM KSMPQASLFD DHGRREEGRN GNDGLTRDFL GLRAISQRDL  420
LNMAGIETCM SNSYDNQKKK SWLGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	110	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	3e-98	C2H2 family protein