PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554189.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 628aa MW: 67877 Da PI: 6.1435

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554189.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.8	7.4e-15	209	268	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_028554189.1 209 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 268 57*****************666664478446***********************98 PP
2	AP2	46.9	7e-15	311	362	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028554189.1 311 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 362 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MASMNNWLGF SLSPQEHSLS TEEADCYGSN PTLRPDDWSI KSLDFKGTPS ELSMIVDSSG 60 GKRGNMEDVV VDEPKLEDFL GGHSFSDHEP KIGSLAGDHY LYSNCSLQVP GVASGGGGNG 120 SIGLSMIKTW LRNQPAPSGP MMEGNEGGDD VGSGTSQSLA TGGGGDDGGE SLLLEKEKGG 180 GNCGKTDAQS GAIEAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK 240 GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPINNY EKELEEMKHM TRQEYVASLR 300 RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF 360 RGLNAVTNFD MSRYDVKSIL ESSTLPIGGA AKRLKDVADG HSESSIDGQR SDDSSSSIVV 420 ASQLREAALA GYASSQHYGW PTIAFQQPQQ HIGLHYPYTV GQQRGWCKPE PDVVTLGHGV 480 QDMQQEIHLG STTHNFFQPS GIHNMVGIES SMEQQSGGSS SSMMYGGSGY VIPMSSMMVD 540 GSQVVGGVNG GGYENMLGSS DPYSGRNVYY SNSVVKENNG YENGNGWMVN SAPAVGARQG 600 GGGMGNCQAA PPLFTEYFVE ELRKVMLK

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MASMNNWLGF SLSPQEHSLS TEEADCYGSN PTLRPDDWSI KSLDFKGTPS ELSMIVDSSG  60
GKRGNMEDVV VDEPKLEDFL GGHSFSDHEP KIGSLAGDHY LYSNCSLQVP GVASGGGGNG  120
SIGLSMIKTW LRNQPAPSGP MMEGNEGGDD VGSGTSQSLA TGGGGDDGGE SLLLEKEKGG  180
GNCGKTDAQS GAIEAVPRKS IDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK  240
GRQVYLGGYD KEEKAARAYD LAALKYWGTT TTTNFPINNY EKELEEMKHM TRQEYVASLR  300
RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF  360
RGLNAVTNFD MSRYDVKSIL ESSTLPIGGA AKRLKDVADG HSESSIDGQR SDDSSSSIVV  420
ASQLREAALA GYASSQHYGW PTIAFQQPQQ HIGLHYPYTV GQQRGWCKPE PDVVTLGHGV  480
QDMQQEIHLG STTHNFFQPS GIHNMVGIES SMEQQSGGSS SSMMYGGSGY VIPMSSMMVD  540
GSQVVGGVNG GGYENMLGSS DPYSGRNVYY SNSVVKENNG YENGNGWMVN SAPAVGARQG  600
GGGMGNCQAA PPLFTEYFVE ELRKVMLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-129	AP2 family protein