PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554422.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 402aa MW: 45273.7 Da PI: 6.5194

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.7e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta +Aa+a+++a+ k++g XP_028554422.1 159 SLYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHDAARAYDRAAIKFRG 208 57*****************......55**********************998 PP
2	AP2	38.1	3.8e-12	251	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ +Aa+a+++a+ k +g XP_028554422.1 251 SKYRGVTLNK-CGRWEAR---M---GqllGKKYVYLGLFDSEVKAARAYDKAAIKCKG 301 89******.7**...5...334336******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MILDLNGTLG ANWSFAQKKI LQEGSCGGQM VDSGSSNSSV LNGEEYSNIS EDDMSSSHPA 60 FRFGILKDAV ELEEEVDEIR VISDSDIVTH QLFPQHPQGF SEWHSGRTVT ASSLSRQPLE 120 DLIIFQSNVP AAGEVKLIQP QQQQLQVKKS RRGPRSRSSL YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHDAARAYD RAAIKFRGLD ADINFSLSDY EEDLKQMRNL TKEEFVQILR 240 RRSTGFSRGS SKYRGVTLNK CGRWEARMGQ LLGKKYVYLG LFDSEVKAAR AYDKAAIKCK 300 GKEAVTNFQQ SSYNYLLPKD DGEDLGHGID LNLSISQPSV CSQNRNVNLV GQQLYYGPFE 360 ASDQIKEMPA NLLAMAPDHP QVWSNIYPGF FPVNEDNIQP WI

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MILDLNGTLG ANWSFAQKKI LQEGSCGGQM VDSGSSNSSV LNGEEYSNIS EDDMSSSHPA  60
FRFGILKDAV ELEEEVDEIR VISDSDIVTH QLFPQHPQGF SEWHSGRTVT ASSLSRQPLE  120
DLIIFQSNVP AAGEVKLIQP QQQQLQVKKS RRGPRSRSSL YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHDAARAYD RAAIKFRGLD ADINFSLSDY EEDLKQMRNL TKEEFVQILR  240
RRSTGFSRGS SKYRGVTLNK CGRWEARMGQ LLGKKYVYLG LFDSEVKAAR AYDKAAIKCK  300
GKEAVTNFQQ SSYNYLLPKD DGEDLGHGID LNLSISQPSV CSQNRNVNLV GQQLYYGPFE  360
ASDQIKEMPA NLLAMAPDHP QVWSNIYPGF FPVNEDNIQP WI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	5e-82	AP2 family protein