PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554460.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 826aa MW: 94660.8 Da PI: 6.9196

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.2	1e-16	91	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA +vGF v ++ks+ s ++g + + + Csk g+ + + r++ +t+C+a++ vk++ dg +v + +leHnH+++ XP_028554460.1 91 NFYKQYALRVGFGVAVKKSSFS-KSGVCRRLILGCSKGGRGRADACY-----LARQTAKTNCEAMIAVKLWGDGLLHVVDAKLEHNHPVS 174 6***************9999.7888***********99998.....889999***************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence
MTTNESAMEA PFVADEIDEM KDVEFNDMVP SDSNDPQEMM KDLSKKDEAK EMVTTTDIAD 60 DEEKVDKVGQ NSDDKIPGIG MAFRTYEEAS NFYKQYALRV GFGVAVKKSS FSKSGVCRRL 120 ILGCSKGGRG RADACYLARQ TAKTNCEAMI AVKLWGDGLL HVVDAKLEHN HPVSPSTAQF 180 LRCYQKMAHT MNIVQQGGHR NSHVVDKDCV SMTEIGRLKL GEGDDEAIHQ FFARMQNKNP 240 KFFYSVDLDQ NGRMRNLFWA DARSRAANRY FGDVVAFDST CLTEKQDLPL VSFVGVNHHG 300 QSVLLGCGLL SNETVETFVW FFKTWLTCMM NCYPNAIITD LCKPIQDAVA EVFQGTRHRL 360 CLHNVMKKVP EKVRGHEELK AIKKELKKLV YDSLRAYEFE HEWKKMIKKF GLEGMSVAQR 420 GESLSTYFDG FVYPRTTIKH FFSKYETIIQ SKCKKEAQAD SESFHKTPLI ASKFYMEEQL 480 SKLYTINMFQ KFQDELKATM YCHASPMKID GSIQIFEVKE CSYIENGKRT ESKDHEVFYN 540 AEELAVQCIC GFFQFHGILC RHSLSVFKLQ QIFEIPSHYI LNRWKKDFKR LHTLANYADD 600 IVPDSLVDRH DYLSMRFLQL VEVGFLSEDR YQLAVKLIRE LEKFLLDEPG CRDRQSRLLS 660 FETQPGQCVQ DLLASRFVIS ECNKSQSSLQ AKRRGRPQKK LEESNIEALV RANKEQDFLR 720 SSLIQSENPV LQAASTSLHQ DAHIGSQGGI DLMEEVNQNE LSFGPHFGMH VNQDQIVGQV 780 RMQPSNLFQV QYEQQGLSTP TRMPWLYHQL YQEDQIPKAP SGQRNG

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence

MTTNESAMEA PFVADEIDEM KDVEFNDMVP SDSNDPQEMM KDLSKKDEAK EMVTTTDIAD  60
DEEKVDKVGQ NSDDKIPGIG MAFRTYEEAS NFYKQYALRV GFGVAVKKSS FSKSGVCRRL  120
ILGCSKGGRG RADACYLARQ TAKTNCEAMI AVKLWGDGLL HVVDAKLEHN HPVSPSTAQF  180
LRCYQKMAHT MNIVQQGGHR NSHVVDKDCV SMTEIGRLKL GEGDDEAIHQ FFARMQNKNP  240
KFFYSVDLDQ NGRMRNLFWA DARSRAANRY FGDVVAFDST CLTEKQDLPL VSFVGVNHHG  300
QSVLLGCGLL SNETVETFVW FFKTWLTCMM NCYPNAIITD LCKPIQDAVA EVFQGTRHRL  360
CLHNVMKKVP EKVRGHEELK AIKKELKKLV YDSLRAYEFE HEWKKMIKKF GLEGMSVAQR  420
GESLSTYFDG FVYPRTTIKH FFSKYETIIQ SKCKKEAQAD SESFHKTPLI ASKFYMEEQL  480
SKLYTINMFQ KFQDELKATM YCHASPMKID GSIQIFEVKE CSYIENGKRT ESKDHEVFYN  540
AEELAVQCIC GFFQFHGILC RHSLSVFKLQ QIFEIPSHYI LNRWKKDFKR LHTLANYADD  600
IVPDSLVDRH DYLSMRFLQL VEVGFLSEDR YQLAVKLIRE LEKFLLDEPG CRDRQSRLLS  660
FETQPGQCVQ DLLASRFVIS ECNKSQSSLQ AKRRGRPQKK LEESNIEALV RANKEQDFLR  720
SSLIQSENPV LQAASTSLHQ DAHIGSQGGI DLMEEVNQNE LSFGPHFGMH VNQDQIVGQV  780
RMQPSNLFQV QYEQQGLSTP TRMPWLYHQL YQEDQIPKAP SGQRNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-119	FAR1 family protein