PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028554522.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 380aa MW: 43057.8 Da PI: 7.9004

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028554522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.1	3.7e-49	7	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGf FhPtd el+++yL++k +g+k ++ evi+e+diyk ePwdLp+ + ++++ w+fF++rd+ky++g+r+nrat++gyWk+tgkd+++ XP_028554522.1 7 LPPGFGFHPTDVELISHYLRRKNQGQKADF-EVIPELDIYKREPWDLPAccPIPTRDSMWHFFASRDRKYPNGSRTNRATEAGYWKSTGKDRNIR 100 79***********************999.99***********6345666899********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLvf++gr p+g++tdW+mhey + XP_028554522.1 101 F-LNQVIGTKKTLVFHQGRPPSGKRTDWIMHEYFM 134 9.8999*************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MEALKALPPG FGFHPTDVEL ISHYLRRKNQ GQKADFEVIP ELDIYKREPW DLPACCPIPT 60 RDSMWHFFAS RDRKYPNGSR TNRATEAGYW KSTGKDRNIR FLNQVIGTKK TLVFHQGRPP 120 SGKRTDWIMH EYFMDEKESK TSSVIKSTYV LCRVTKRNGF AVEGSNVSAQ TEEANAYQNT 180 AKALYLSLHE SMAQQKSSQS ESTENLNAWF EELLFDGSIH FNITSSIESK TAPQVSQNVH 240 HALIPKDEPL DLGFWPEEII DVLHDDISAM PEINELLAVD HKATSSLINS NKYETDGFEK 300 AIPAIGTFQH NVKLQVQSRK MESLNSASVC QTIKPAQVDC GIKNNRPRKP INLKLENKRE 360 AIQDAIKGLL AVVRSFFSCV

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MEALKALPPG FGFHPTDVEL ISHYLRRKNQ GQKADFEVIP ELDIYKREPW DLPACCPIPT  60
RDSMWHFFAS RDRKYPNGSR TNRATEAGYW KSTGKDRNIR FLNQVIGTKK TLVFHQGRPP  120
SGKRTDWIMH EYFMDEKESK TSSVIKSTYV LCRVTKRNGF AVEGSNVSAQ TEEANAYQNT  180
AKALYLSLHE SMAQQKSSQS ESTENLNAWF EELLFDGSIH FNITSSIESK TAPQVSQNVH  240
HALIPKDEPL DLGFWPEEII DVLHDDISAM PEINELLAVD HKATSSLINS NKYETDGFEK  300
AIPAIGTFQH NVKLQVQSRK MESLNSASVC QTIKPAQVDC GIKNNRPRKP INLKLENKRE  360
AIQDAIKGLL AVVRSFFSCV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-66	NAC family protein