PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554728.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 247aa    MW: 27554 Da    PI: 10.2784
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554728.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.7e-19115202196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v++  +l lp kf+++h ++    +t++lede+g++ e  +   +k+ +  l++GWk+F+ +++L++gD +vFkl++ ++f  ++ 
  XP_028554728.1 115 FVKPMVRSHVSSCFWLGLPTKFCKDHLNP--DVMTMVLEDEKGEEHESIY--IGKRTG--LSGGWKSFAVDHNLEDGDALVFKLIKPTRF--KIY 201
                     89************************544..5689***************..555544..************************997777..444 PP

                     E CS
              B3  96 v 96 
                     +
  XP_028554728.1 202 I 202
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MKNDKENCFV RLAEPSWNAA ALNSLSPVCM RAPQRTGVLS ATVPLAVGRR AEVWSTPHSA  60
LSFSTKLCST RTLGYKSESI GREYMGRIPS YEEKVQALKK AEMLQSQMAS NHPSFVKPMV  120
RSHVSSCFWL GLPTKFCKDH LNPDVMTMVL EDEKGEEHES IYIGKRTGLS GGWKSFAVDH  180
NLEDGDALVF KLIKPTRFKI YIVKAVGGSP VVAKEKKDPS SLLPKQVAEK ESTKLVSNIR  240
KRKIKRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-46B3 family protein