PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554763.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 250aa    MW: 28782.8 Da    PI: 10.0546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.87.1e-1233983098
                    ..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 30 keesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    + +++  t++d+ grsW  ++  ++k++   + ++GW +Fvk  ++  g f+vFk++g+++f  +vkvf+
  XP_028554763.1 33 ELNHRAATIRDPLGRSWPANV--EGKGEDlWFCGEGWMNFVKGLDIGIGYFLVFKYKGNMKF--YVKVFD 98
                    334557999************..88888877889************************9**9..***998 PP
2B340.25.9e-131652451696
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     l +p  f++++  ++ +  +++l d++grs  v++++rk++    + ++ GW eF+  n+L +gD ++F+ ++++   + v+v
  XP_028554763.1 165 LNVPLGFLASYRFEN-K-SKVILVDPKGRSSPVRITIRKRRPIiqCCFGMGWHEFCLRNHLSAGDKCIFEIKSEEADAYIVHV 245
                     778999999995442.3.38***************66555544789999*********************8876666566655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MLLLTTQMAK VAMKKKKVAT RFFKVMLPGY LNELNHRAAT IRDPLGRSWP ANVEGKGEDL  60
WFCGEGWMNF VKGLDIGIGY FLVFKYKGNM KFYVKVFDLT ACEVEYSHEI CSYSKRFELS  120
STLNKQGEAK ASKTAEKLIK QFCKSLGPHF SITLKFCNLR SRPYLNVPLG FLASYRFENK  180
SKVILVDPKG RSSPVRITIR KRRPIIQCCF GMGWHEFCLR NHLSAGDKCI FEIKSEEADA  240
YIVHVHIIRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-18B3 family protein