PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554904.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 145aa    MW: 16584.5 Da    PI: 8.6348
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.61.1e-1348138194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f ++++ps  +k+  l++p  fa ++    +  + + l   d + r+W v +    +++++ +++GWkeF++ n+L++g + +F++ + +e+ l+
  XP_028554904.1  48 FMSIMVPSCISKRFYLTIPIAFAIQYlpR-I-SC-IVLLQLDDKERTWPVHC--LVQGNSIGFSSGWKEFAQYNQLNVGYVHIFEMLEAQEGVLM 137
                     78899******************999522.2.24.3333345688*******..666667889**********************8777555444 PP

                     E CS
              B3  94 v 94 
                     v
  XP_028554904.1 138 V 138
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MNLSNEVSLA KQCNPKDFII SKKARLTDAK KNIVLHLAET IQTDRPTFMS IMVPSCISKR  60
FYLTIPIAFA IQYLPRISCI VLLQLDDKER TWPVHCLVQG NSIGFSSGWK EFAQYNQLNV  120
GYVHIFEMLE AQEGVLMVVH INKIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-18B3 family protein