PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028554990.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 268aa    MW: 29664.1 Da    PI: 10.3814
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028554990.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.72e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_028554990.1  5 KQKWTSEEESALKAGVVKHGAGKWRTILKDPEfssvlSLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGAPKQKWTS EEESALKAGV VKHGAGKWRT ILKDPEFSSV LSLRSNVDLK DKWRNMSVTA  60
NGWGSREKAR MALRKSRQVP KQEEAPLDLT AVDDHNDELV DVKPLAVASP LPLLTAPRKL  120
DQYSAPPNLK KLLSIKLKAL TANGKLSKVK RRYRIPQSLP QSEHRRTKSK LFLPEGRQKE  180
PPRVDKKDIK ALTKPQIDAE LARMRNMTAE EAALAAAQAV AEAEEAMAEA EEAAREAEAA  240
EADAEAAEAF AEAALKTLKK RAKSNFQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258264LKKRAKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.14e-66MYB_related family protein