PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028555010.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24649.1 Da    PI: 7.3429
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028555010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien++nrqvtfskRrng++KKA+ELSvLCd++ a+i+fs++g+l  +s
  XP_028555010.1  9 KKIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDTALIMFSPSGRLSSFS 58
                    68********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MGRVKLEIKK IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDTALIMFSP SGRLSSFSGR  60
RRIEDVIEKC INVREHDNGG RVKLDKMDKD YLMRTLIKLK YEDDLAAHQA KFLEPNPASL  120
DSSISLSELE SYEKFFIESL ANVSEKKELR DVRVDVNSNG PTSGSRHVAT RLCIYGALIS  180
IDPSCAVNNP GMPELPSVEL QVENDRCDGE NANVGRSLAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-31MIKC_MADS family protein