PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028555079.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 429aa    MW: 46961.8 Da    PI: 7.193
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028555079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-132351146
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +l +a+ ++G++ W+ Ia++++ gRt++++k++w++
   XP_028555079.1  2 KLMEAHLKHGNK-WAEIAKMLP-GRTDNSIKNHWNS 35
                     799*********.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    
MKLMEAHLKH GNKWAEIAKM LPGRTDNSIK NHWNSSLRKK AEFVLKTGKL PPADMPGIQY  60
GAEDKANSGP NQNFNFSNKR LVASANILPE NCSSAHSSVP PKISEAENQD SLMVPVSAEV  120
SELNSLDEAA KKSGKQIWVV PVLAQVSNLN DSLVIEGKSD TSDVPQCPAQ ASEIDSVHSR  180
SDSGVSCFTP EVCQNEKPSG TKLYPVADNL SSLCYKPPQL EDIGVSVMSS LLFENNSLQP  240
AFKVETVSSS DGHSTPSSVN VTRSFQPSIE SILRSAARSF QNTPSIIKRR SEAHSPVPPG  300
TMSTNETRVQ DSCTPNEESV NNIEGSAFSV SKLSFSPCTI NEDLLDKGKD FDISPPYRLW  360
SKRKATFKPV EKQLDFSLEK ANMDVNTKIS SFEVNKNSYS PTNMHVWTMQ GKKLKNDLAD  420
LKTVTSPIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.17e-22MYB family protein