PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555164.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 530aa MW: 59298.1 Da PI: 8.5468

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.8	2.5e-08	416	464	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E ++lv++v ++G g+W+ I + +Rt ++k++w+++l XP_028555164.1 416 AWTLGEVLKLVEGVSRYGAGRWSQIRQVAFasgSHRTSVDLKDKWRNLL 464 7**********************99998999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MGALVDEDGV GRRSTENGEP DGIVASNPVV YQLVRVDGDG RLIPATDDEL IEVKHFVEED 60 GIISGTRQSE NEVDTKKVMF KMDVDGPSFG QPNISDTLAK NQSTEACSEI RKNAVNEAAE 120 GSFSKKFSSL KPDFSLLEGE ICLDNFSIRE LQEAFRATFG RYTSVKDKLW LKRRIAMGLT 180 NSCNIPSANF IIKDNKIVLC NVQEETTSRT QRNMSYPGYI MMNNSTDPLN ETLQRTLNDT 240 SSGIVEQKAS FTKALDKSLE KCNVENLNTQ MEQCGAKRIR RPTKRYIEEH TEVEVMAYSG 300 RVASLGKTAM HDQHCLKSKV RTPCLVDTSQ DLLGGYDARI PSVLRVRRRP PRKNFLTLVN 360 FVHTEREKMN PEVLNSEQSP HQKHEKFISS VGAAFHEKSD TVHPVEASVK RKHHRAWTLG 420 EVLKLVEGVS RYGAGRWSQI RQVAFASGSH RTSVDLKDKW RNLLKASFAQ VPTDKGIGNS 480 RKPASLPIPT PILLRVRELA DKRSDSEIEF GSSQFVGHGG IVQEKETGFL

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MGALVDEDGV GRRSTENGEP DGIVASNPVV YQLVRVDGDG RLIPATDDEL IEVKHFVEED  60
GIISGTRQSE NEVDTKKVMF KMDVDGPSFG QPNISDTLAK NQSTEACSEI RKNAVNEAAE  120
GSFSKKFSSL KPDFSLLEGE ICLDNFSIRE LQEAFRATFG RYTSVKDKLW LKRRIAMGLT  180
NSCNIPSANF IIKDNKIVLC NVQEETTSRT QRNMSYPGYI MMNNSTDPLN ETLQRTLNDT  240
SSGIVEQKAS FTKALDKSLE KCNVENLNTQ MEQCGAKRIR RPTKRYIEEH TEVEVMAYSG  300
RVASLGKTAM HDQHCLKSKV RTPCLVDTSQ DLLGGYDARI PSVLRVRRRP PRKNFLTLVN  360
FVHTEREKMN PEVLNSEQSP HQKHEKFISS VGAAFHEKSD TVHPVEASVK RKHHRAWTLG  420
EVLKLVEGVS RYGAGRWSQI RQVAFASGSH RTSVDLKDKW RNLLKASFAQ VPTDKGIGNS  480
RKPASLPIPT PILLRVRELA DKRSDSEIEF GSSQFVGHGG IVQEKETGFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	4e-55	MYB_related family protein