PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555220.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 239aa MW: 27453.1 Da PI: 8.3629

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.3	2.2e-10	16	47	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd++l +++ ++G g+W++ a++ g XP_028555220.1 16 RGPWTVEEDLILTNYISKHGEGRWNSLAKCAG 47 89****************************99 PP
2	Myb_DNA-binding	52	1.6e-16	105	148	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_028555220.1 105 RGNITAEEQFLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 148 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
METGKQKSSV EEELRRGPWT VEEDLILTNY ISKHGEGRWN SLAKCAGNVY LENLCIIYLS 60 TAASTLLSFS CMHLYIYINK RSGLKRTGKS CRLRWLNYLR PDVRRGNITA EEQFLILELH 120 SRWGNRWSKI AQHLPGRTDN EIKNYWRTRV QKHANQQWMP RLLERIRTAV DSSRAISNAH 180 TTLTSSNDNS KFSLPPVPGC CNDVVEEEGW PEFPTPSDEG SMLAGLWELS AMGSNMYVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	2e-61	MYB family protein