PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555243.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 615aa MW: 69968.1 Da PI: 5.8653

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.8e-09	510	551	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++ + el+++a++q+G++ ++ I ++ +R++ q+k ++ + XP_028555243.1 510 RWSKTDTELFYQAIRQYGTD-FAMIQVLFP-NRSRQQVKAKFKN 551 9*****************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MFPILDLGDD LLQLPKTTAD PETLHSNFNV RDDLFTHGTT VGRNIKFNPK SHISNNRNPR 60 KPSTYRASEG PSSTSKFHNA VDDEHVKKFQ SELQDIKKNA SASYEYSQLD SLPSHNESLD 120 AHGSNFYSND PIESLEIKAP SCFPAHLSEE RSCCLNFNDL EVQSLTANED IHTVEAEHTI 180 DHIGESNLEE CVLHIVQNGE ARKSSMKVRS GNEHVKKLES ELQDATKSAS ANHEYSQMDS 240 LPSHNELLDA HDSSFSASDL IESLKIKAPS CFPTHSSEER ACCLNINDLE AQPLTENEDL 300 HTMEAEHTID HIEESNLEDC TPSIVQNGAG KSSMKLRPRN KKLKTNEENF ASTDQIAKKI 360 IPEMDDDYDG DSYNDDDMPK QKKRKLPRKS SSRSKHSEVP DSTANDTPKK RLQHGSSRCK 420 SARRQVNEGL LEIPEDEVDR KKLVITDLIR RASFKERISS KEAAASKNSF VDKCVENEQD 480 SNDNDRNIDI QQEGRRINYH SYMKRTLQTR WSKTDTELFY QAIRQYGTDF AMIQVLFPNR 540 SRQQVKAKFK NEQRKHPLQI ADALVHRSKD HSHFEKFIQH LQTVAEQKTK NTASDPTAQS 600 EDEGDQNEEE MQHVL

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MFPILDLGDD LLQLPKTTAD PETLHSNFNV RDDLFTHGTT VGRNIKFNPK SHISNNRNPR  60
KPSTYRASEG PSSTSKFHNA VDDEHVKKFQ SELQDIKKNA SASYEYSQLD SLPSHNESLD  120
AHGSNFYSND PIESLEIKAP SCFPAHLSEE RSCCLNFNDL EVQSLTANED IHTVEAEHTI  180
DHIGESNLEE CVLHIVQNGE ARKSSMKVRS GNEHVKKLES ELQDATKSAS ANHEYSQMDS  240
LPSHNELLDA HDSSFSASDL IESLKIKAPS CFPTHSSEER ACCLNINDLE AQPLTENEDL  300
HTMEAEHTID HIEESNLEDC TPSIVQNGAG KSSMKLRPRN KKLKTNEENF ASTDQIAKKI  360
IPEMDDDYDG DSYNDDDMPK QKKRKLPRKS SSRSKHSEVP DSTANDTPKK RLQHGSSRCK  420
SARRQVNEGL LEIPEDEVDR KKLVITDLIR RASFKERISS KEAAASKNSF VDKCVENEQD  480
SNDNDRNIDI QQEGRRINYH SYMKRTLQTR WSKTDTELFY QAIRQYGTDF AMIQVLFPNR  540
SRQQVKAKFK NEQRKHPLQI ADALVHRSKD HSHFEKFIQH LQTVAEQKTK NTASDPTAQS  600
EDEGDQNEEE MQHVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	2e-32	MYB_related family protein