PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555352.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 242aa MW: 28182.6 Da PI: 6.8008

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.6	6.9e-19	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv++v+++G ++W+ Ia+ g++Rt+k+c++rw++yl XP_028555352.1 9 KGPWTEQEDMQLVCYVHLFGERRWDFIAKVTGLNRTGKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	56.3	7.5e-18	63	107	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 gr+T++E++l v+++ ++G++ W++Iar+++ gRt++++k++w++++ XP_028555352.1 63 GRMTPQEEQLVVELHSRWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 107 89*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MAASEEMRKG PWTEQEDMQL VCYVHLFGER RWDFIAKVTG LNRTGKSCRL RWLNYLHPGL 60 KHGRMTPQEE QLVVELHSRW GNRWSRIARR LPGRTDNEIK NYWRTHMRKK AQERQKSSQL 120 SPSSSSSSSS SLNSIAVAEA ENKWFEQINH GSSISTSGFE AEVELNGYSM DQIWNELAIS 180 ENPWLNFEAR KEKFNELEIT EMASPLWDYS ESQMWKVDDE NLKLFSPMAG LVIPNYQYGT 240 GI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	7e-74	MYB family protein