PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555687.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 291aa MW: 33069.3 Da PI: 8.7881

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.8e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+d+++++G g +W + +++ g++R++k+c++rw++yl XP_028555687.1 14 KGPWAPEEDNKLKDYIEKYGIGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79****************999**********************97 PP
2	Myb_DNA-binding	40.7	5.4e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+++ +Ed ++ +++ G++ W+ Ia++++ gRt++++k++w++ XP_028555687.1 69 GNFSDDEDRIICSLFASIGSR-WSIIASHLP-GRTDNDIKNYWNT 111 89*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence
MGRAPCCDKA NVKKGPWAPE EDNKLKDYIE KYGIGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGN FSDDEDRIIC SLFASIGSRW SIIASHLPGR TDNDIKNYWN TKLKKKLFGI 120 SPTQRKSSHQ VKQQNQQLPA SLDHNLLHPS TSTSLLSHHQ YYPSIFSNST TSSPLVQMWP 180 SQQYQTELNS SKLLIFGGDQ LNCCSSEISF GRPMEFESEN YSLFNEIGDQ KLLFGSITGG 240 GGVIEAPLIN SDYEEIKQVI NPKNIYFDDP RRATEASGNS FKPQERVMYY Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	2e-76	MYB family protein