PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028555868.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 321aa    MW: 36924.8 Da    PI: 10.2825
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028555868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-131297296
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                    fkv+     +++ rl++p  f e+ +g+    ++ +l+++ gr+W v l  r+ ++  ++++GW+ Fv++  ++ g+f++F +dg+ +f   vk+
  XP_028555868.1 12 FKVM--IGDFQT-RLRIPPCFHEHLSGE--ILVKSVLRSRGGRRWAVML--RREGKNLFFGEGWECFVSDLSIQLGEFLLFVYDGDLGF--DVKI 97
                    5666..444444.69****999666655..77899**************..*********************************98877..5555 PP
2B360.52.9e-191842661299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++  +++p +f++e+++ + e   ++l+d++grsW v++ ++ ++  + ++kGW +F + n+LkegD++vF++ +  ++  +v++fr+
  XP_028555868.1 184 RQEYMTIPASFMRECDLGSME--AIILQDQKGRSWPVRIAHWIGR--VAMAKGWAKFRDVNHLKEGDVCVFEFLE-ADTAIHVHIFRA 266
                     55779**********777555..6***************777776..88***********************887.56668****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MEKPLWERDS FFKVMIGDFQ TRLRIPPCFH EHLSGEILVK SVLRSRGGRR WAVMLRREGK  60
NLFFGEGWEC FVSDLSIQLG EFLLFVYDGD LGFDVKIYGI TGCEKVDPIA SMKVEQEEEM  120
EIREKVPAKT STALIRAPGR RREILNGRVI LGGLKVFSNE SALNSARSFK SSRPFFIATY  180
RRSRQEYMTI PASFMRECDL GSMEAIILQD QKGRSWPVRI AHWIGRVAMA KGWAKFRDVN  240
HLKEGDVCVF EFLEADTAIH VHIFRAKQNT AGVLRRAGNK KREQEVLKAE RSFRTNAIFA  300
SIFLKSRKYN LTSLTEWTVA A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-20B3 family protein