PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028555917.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 416aa MW: 46556.1 Da PI: 8.1614

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028555917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4e-33	45	99	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFveav+qLGG+e AtPkt+l+lm+++gLtl+h+kSHLQkYRl XP_028555917.1 45 KPRLKWTPELHERFVEAVNQLGGPETATPKTVLRLMGIPGLTLYHLKSHLQKYRL 99 79****************************************************8 PP
2	Myb_DNA-binding	69	7.8e-22	47	98	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT+e++e++v+av+qlGg+ t+kt+ r mg g+tl+++ks++qky+ XP_028555917.1 47 RLKWTPELHERFVEAVNQLGGPetaTPKTVLRLMGiPGLTLYHLKSHLQKYR 98 89*************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MYHHLDHNNS KLISSRKSFP LERNLFLQTG NGPGDAGLTL STDVKPRLKW TPELHERFVE 60 AVNQLGGPET ATPKTVLRLM GIPGLTLYHL KSHLQKYRLS KNLQAQTNGG TENYVEIPTS 120 ALNRTSSEGS GSFVHNINVG PFSKKTMQIN QALQKQMEVQ RRIDDQFEVM MMQRHLQRQI 180 EAQGRYLQSV LEKAQETLGK ENLGSAGLET ARIQPKILNE CFTSAFPGLE ETDGSHNLQG 240 NAAQITYCSM ESCLTTSERS KKDQQMHNTN MVMGAYHGNL SLGAQEMQEG ARLAQIQSGL 300 CADLTSHRLF SQSRENDSTH CTLPVSRSSS ILSMSKKNKK DTTEGSNISE AHRRQRDEHN 360 SYLEQAGYKG NEIQQISLRN STLFELPSAT TQLDLNTCDK YSASKNSNKF DLNDFS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MYHHLDHNNS KLISSRKSFP LERNLFLQTG NGPGDAGLTL STDVKPRLKW TPELHERFVE  60
AVNQLGGPET ATPKTVLRLM GIPGLTLYHL KSHLQKYRLS KNLQAQTNGG TENYVEIPTS  120
ALNRTSSEGS GSFVHNINVG PFSKKTMQIN QALQKQMEVQ RRIDDQFEVM MMQRHLQRQI  180
EAQGRYLQSV LEKAQETLGK ENLGSAGLET ARIQPKILNE CFTSAFPGLE ETDGSHNLQG  240
NAAQITYCSM ESCLTTSERS KKDQQMHNTN MVMGAYHGNL SLGAQEMQEG ARLAQIQSGL  300
CADLTSHRLF SQSRENDSTH CTLPVSRSSS ILSMSKKNKK DTTEGSNISE AHRRQRDEHN  360
SYLEQAGYKG NEIQQISLRN STLFELPSAT TQLDLNTCDK YSASKNSNKF DLNDFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	6e-86	G2-like family protein