PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556190.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 27529.3 Da    PI: 9.6331
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556190.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.52.7e-311665150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifss+g+lyey+
  XP_028556190.1 16 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSSRGRLYEYA 65
                    79***********************************************8 PP
2K-box110.22.1e-3684179499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     s++ s +e++a+++ qe++kL+++i nLq+++R+l+Ge L+++sl++L+qLe++Lek+++kiRskKnell+++ie++qk+e elq++n++Lr+k+
  XP_028556190.1  84 SNSGSISETNAQYYLQEASKLRQQITNLQNSNRNLMGEALSTMSLRDLKQLETRLEKGINKIRSKKNELLYAEIEYMQKREMELQNDNMYLRNKI 178
                     4444599***************************************************************************************9 PP

           K-box  99 e 99 
                     +
  XP_028556190.1 179 A 179
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MMEPKEKMGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV ALVIFSSRGR  60
LYEYANNSVK GTIERYKKAS ADNSNSGSIS ETNAQYYLQE ASKLRQQITN LQNSNRNLMG  120
EALSTMSLRD LKQLETRLEK GINKIRSKKN ELLYAEIEYM QKREMELQND NMYLRNKIAD  180
NERTQQQQHI NMMPSTSTEY EVMPSFDSRN FLQVNLMDPS HHYSLQQQTA LQLGYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-113MIKC_MADS family protein