PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556265.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 344aa MW: 40648.8 Da PI: 8.8319

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.7	1.2e-14	29	116	3	99
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 kv+ + +++ + lp kf++++ ++ + + le +sg+ We+ l +k +++ ++ +GW++F ++n+++e +++F+++++s+f +v+++ XP_028556265.1 29 KVM--NGDFTQ-KMELPLKFVKNF-RVELID-VVALEAPSGKLWEIGL--CKEQDHLYFNGGWEKFIEENEVEEYYILIFEYVSDSRF--RVRIY 114 555..444444.499****666.344343.799999******..*******************************99999..99998 PP -S CS B3 98 rk 99 ++ XP_028556265.1 115 DR 116 87 PP
2	B3	39.1	1.3e-12	250	332	15	99
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 +++p +f++eh +k++ +t++++s+++W v+++ +k+s + + +k + ++n+++ gD +vF+l+++ + el ++++r+ XP_028556265.1 250 FITIPLPFVSEHLPQKPN--GITVYNQSNKKWFVNCSSNKNSFG-FSGKSVSALFHENKIQKGDACVFELKEKrKVVELQMRIVRA 332 589*******655445..49999*******66666655.4689*******************9766888888888775 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MKDRCWICKK WEEHFYWDHF EESKFHFMKV MNGDFTQKME LPLKFVKNFR VELIDVVALE 60 APSGKLWEIG LCKEQDHLYF NGGWEKFIEE NEVEEYYILI FEYVSDSRFR VRIYDRTGCV 120 RASCNLIDNT RAKQKNVDQT LQNFHNSHSP RIDYNDHTML HEQATDNKSD SSEGFIKDEE 180 HGMVKVKDDV RIRYSRNCKK EVAKLPPEAK LCLISLRYKV RILEHKFLRK QGNCSFVKLI 240 APWSIKPVSF ITIPLPFVSE HLPQKPNGIT VYNQSNKKWF VNCSSNKNSF GFSGKSVSAL 300 FHENKIQKGD ACVFELKEKR KVVELQMRIV RAKEVFSILT KECF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MKDRCWICKK WEEHFYWDHF EESKFHFMKV MNGDFTQKME LPLKFVKNFR VELIDVVALE  60
APSGKLWEIG LCKEQDHLYF NGGWEKFIEE NEVEEYYILI FEYVSDSRFR VRIYDRTGCV  120
RASCNLIDNT RAKQKNVDQT LQNFHNSHSP RIDYNDHTML HEQATDNKSD SSEGFIKDEE  180
HGMVKVKDDV RIRYSRNCKK EVAKLPPEAK LCLISLRYKV RILEHKFLRK QGNCSFVKLI  240
APWSIKPVSF ITIPLPFVSE HLPQKPNGIT VYNQSNKKWF VNCSSNKNSF GFSGKSVSAL  300
FHENKIQKGD ACVFELKEKR KVVELQMRIV RAKEVFSILT KECF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-18	B3 family protein