PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556269.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 89aa    MW: 10389.7 Da    PI: 6.2619
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556269.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-093879245
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                       ++++E +l+ +  k+ G + W++Ia +++ gRt++++  +w 
   XP_028556269.1 38 PEFSEQEVDLISRMYKLVGEK-WSLIAGRIP-GRTAEEIEKYWK 79
                     679******************.*********.***********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    
MNITPILKNI EAQVQELDGV PHHDQKLNEE EKSQSSKPEF SEQEVDLISR MYKLVGEKWS  60
LIAGRIPGRT AEEIEKYWKL KEHRNSSRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01380.11e-21MYB_related family protein