PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556273.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 343aa    MW: 40144 Da    PI: 8.2037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-1529116399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     kv+  +  +++  + lp kfa+++  ++  +  + le +sg+ We+ l  +k +++ ++ +GW++F ++n+++e  +++F++ g+s+f   v+++
  XP_028556273.1  29 KVM--NGDFTQ-KMELPPKFAKNF-RVELID-VVELEAPSGKLWEIGL--CKEQDHLYFNGGWEKFIEENEVEEYYILIFEYAGDSKF--QVRIY 114
                     555..444444.499******666.344443.899*************..**********************************9999..99998 PP

                     -S CS
              B3  98 rk 99 
                     ++
  XP_028556273.1 115 DR 116
                     87 PP
2B337.54.2e-12237329297
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                     +k + + +++++  + +p  f+++h  +k++   +t++++s+++W v+++ +++s++ + +k      ++n+++ gD +vF+l+++ +  el ++
  XP_028556273.1 237 VKLF-TWSMGARPFMAIPLAFVSKHLPQKPN--GITVYNQSNKKWYVNCS-CRSSSWGFAGKSLFTLLQENKIQKGDACVFELKEKgKVVELQMR 327
                     4444.666677777***********655445..49999***********5.77777888999********************9976677777666 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_028556273.1 328 IV 329
                     65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    
MKDRCWICKK WEEHFYWDHF EESNFHFMKV MNGDFTQKME LPPKFAKNFR VELIDVVELE  60
APSGKLWEIG LCKEQDHLYF NGGWEKFIEE NEVEEYYILI FEYAGDSKFQ VRIYDRTGCV  120
RAASNLIDNT RAKQKNVDQT LQNFHNSHSS RTDCNDHPML HEQPTDNRSD FSKVFIKDEE  180
HGMGKDKDDG RIVYSRNCKK EVAELQPEAK LSLMSLRYKV RILERKFGSK QGNCSFVKLF  240
TWSMGARPFM AIPLAFVSKH LPQKPNGITV YNQSNKKWYV NCSCRSSSWG FAGKSLFTLL  300
QENKIQKGDA CVFELKEKGK VVELQMRIVS AKEVLSILTK ECL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-21B3 family protein