PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556330.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 341aa MW: 37727.5 Da PI: 7.6616

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556330.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	144.5	7.8e-45	73	216	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 + +kdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skt++WLl ++k aikel+g s+ a + +++++ +s+ ++s+g XP_028556330.1 73 PMRKDRHSKIYTAQGPRDRRMRLSLDVARKFFDLQDMLGFDKASKTVQWLLSMSKVAIKELVGAASKCAVVSsSEGEEDNSTVSDSKGkstsail 167 579***********************************************************7777722232222222222222224567999 PP TCP 89 ....kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + +++++k++ ++++ + ++a+esr+karararert ek++++ XP_028556330.1 168 vnelE-SNAKPKGRILKSRSIVQPKVARESREKARARARERTLEKKMMRC 216 98742.3333344444444444589999***************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MFPQANEIYY PVEKPDISSA FFPFSPPTFH HDSLHDIFIP TTATATVGAP APAAPDKTPS 60 GGVGPPLTGR RRPMRKDRHS KIYTAQGPRD RRMRLSLDVA RKFFDLQDML GFDKASKTVQ 120 WLLSMSKVAI KELVGAASKC AVVSSSEGEE DNSTVSDSKG KSTSAILVNE LESNAKPKGR 180 ILKSRSIVQP KVARESREKA RARARERTLE KKMMRCGREE DGSRGNYQQA NVLQSIPLGG 240 FLQEEYSSSH DLKSSLDFVA EMEEHCSTSP IYGNEIDHNG SGSVAAFDCN HQTVVGLFQE 300 PWDHMSTFAN NYIDEKVLLG EVLLQTSYGR PISTPSMFDH V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-29	TCP family protein