PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028556340.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family E2F/DP
Protein Properties Length: 363aa    MW: 39778.4 Da    PI: 8.3307
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028556340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.11.3e-27107189271
         E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  XP_028556340.1 107 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnlaspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 189
                     689********...*****999*******************************************************.*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MVSGTSHRPP ENGDKGTGNC RKVVAGGRSS WGTPAFSGGQ SASTSGSAGS PSSRSEQAPA  60
GTPASESTIA RRIKHLEVNG DEAGSSQGAA SAKKKKRGTR AVAGDKSGRG LRQFSMKVCE  120
KVESKGRTTY NEVADELVAE FADPNNNLAS PDQQQYDEKN IRRRVYDALN VLMAMDIISK  180
DKKEIQWKGL PRTSLNDIEE LKAERASLKS RIEKKTAYLQ ELEDQIIGLQ NLIQRNEQLH  240
GSENAPSGGV ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD TYVLKAMRFC  300
EREQQDGTHE PISNGGECSS TQGIYRAQLP LLQWPSPRSK LPTSPPIPGI LKARVKHEQH  360
HNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-129E2F/DP family protein