PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556362.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YB

Protein Properties

Length: 173aa MW: 20117.3 Da PI: 6.9111

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	160.2	3.2e-50	26	118	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdr+lP+an+srim+k++P n+ki+k ak++vqecvsefi+f+tseas+kc rekrktingdd+l a+ tlGf+dy+eplk+ylkkyre e XP_028556362.1 26 REQDRLLPMANISRIMRKAVPPNGKIAKYAKDSVQECVSEFIAFITSEASEKCLREKRKTINGDDILLAMVTLGFDDYIEPLKLYLKKYRESE 118 89****************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence
MAEEMPASHC GGTHESDDES PRSFAREQDR LLPMANISRI MRKAVPPNGK IAKYAKDSVQ 60 ECVSEFIAFI TSEASEKCLR EKRKTINGDD ILLAMVTLGF DDYIEPLKLY LKKYRESEVI 120 KLTSPPVIGL FIYFLRERFN YLYCDALWDY TVSHLRVKEL IFMCFHRKEN YGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.1	6e-54	NF-YB family protein