PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556411.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 707aa MW: 80818.9 Da PI: 9.1354

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.7	6.1e-11	484	528	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L + F +n ps++ +e L+k+l+++ ++V WF+N R+ XP_028556411.1 484 PDAIEKLRQIFDENELPSRTVKENLSKQLDISVEKVDKWFKNARY 528 7899****************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MRAPVKKLIG YKSRNYFANE ENSKTVSMPL NQKGFKVANN KRYYLTPGFR KKRACKRKNN 60 LNGKPIETPQ KKSDFNIDKR IGSFKLTGKR TCFSVGKNSK NLARSSEKKS ARRRRLKGRK 120 KIIVQDEVSR MQRRASYLLI KMKLEQTLID AYSGDGWKGH SREKIKPEKE LQRAQRQILK 180 CKLGIRDSIH QLDLLGSEGR IEDSVMNPDG SVFHEHIFCA KCKSREAFPD NDIILCDGNC 240 NCGFHQKCLE PPLQKSMCQF LHFLETVHCN VSFLFRMLYT ITSVPPGDQG WLCKICNCKM 300 EILETINAHL STCFTVNSSW EDIFKEAVVG PDAEGACSNL VEDWPSDDSE DEDYSPDNNT 360 AEFEENISDD ACSSVNSIFS SDASLNFVNC LGSDESGDEI TNYRRQRRDV DYRKLYDEMF 420 GKEPNDGTEQ SEDEDWGPYR KKKARIASDV GITSTDGENK DSNEKIALGD AISCNKRSIF 480 RIPPDAIEKL RQIFDENELP SRTVKENLSK QLDISVEKVD KWFKNARYAA IKIRKEEASN 540 QLYHRSDVPM VDEGHRRRSD TAVSLDSSCL LPLASIFHLP QHKKKIHRRE NLTSAAFPAK 600 KQKGAATTVH SSAIQARTQS RNAVWLKKHT ITRDRDLTPK KITAIVPEAD KTYINEMQML 660 WVLERRLHQL KQQLLACKDY NEVQAKKLSG EEAVIYVPVA EVKEKVS

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MRAPVKKLIG YKSRNYFANE ENSKTVSMPL NQKGFKVANN KRYYLTPGFR KKRACKRKNN  60
LNGKPIETPQ KKSDFNIDKR IGSFKLTGKR TCFSVGKNSK NLARSSEKKS ARRRRLKGRK  120
KIIVQDEVSR MQRRASYLLI KMKLEQTLID AYSGDGWKGH SREKIKPEKE LQRAQRQILK  180
CKLGIRDSIH QLDLLGSEGR IEDSVMNPDG SVFHEHIFCA KCKSREAFPD NDIILCDGNC  240
NCGFHQKCLE PPLQKSMCQF LHFLETVHCN VSFLFRMLYT ITSVPPGDQG WLCKICNCKM  300
EILETINAHL STCFTVNSSW EDIFKEAVVG PDAEGACSNL VEDWPSDDSE DEDYSPDNNT  360
AEFEENISDD ACSSVNSIFS SDASLNFVNC LGSDESGDEI TNYRRQRRDV DYRKLYDEMF  420
GKEPNDGTEQ SEDEDWGPYR KKKARIASDV GITSTDGENK DSNEKIALGD AISCNKRSIF  480
RIPPDAIEKL RQIFDENELP SRTVKENLSK QLDISVEKVD KWFKNARYAA IKIRKEEASN  540
QLYHRSDVPM VDEGHRRRSD TAVSLDSSCL LPLASIFHLP QHKKKIHRRE NLTSAAFPAK  600
KQKGAATTVH SSAIQARTQS RNAVWLKKHT ITRDRDLTPK KITAIVPEAD KTYINEMQML  660
WVLERRLHQL KQQLLACKDY NEVQAKKLSG EEAVIYVPVA EVKEKVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-113	HB-PHD family protein