PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556580.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARF

Protein Properties

Length: 770aa MW: 86322.5 Da PI: 6.0686

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	1e-22	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_028556580.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 218 99***************************8544444..48**********************************************..888 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l++++ r+ XP_028556580.1 219 KNQLLLGIQRA 229 88889998775 PP
2	Auxin_resp	116.6	2.1e-38	254	337	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPra++seFv++++k++ka+ ++vs+GmRf+m fete+ss rr++Gt++g+sdldp+rWpnS+Wrs+k XP_028556580.1 254 AAHAAATNSRFTIFYNPRACPSEFVIPLSKYVKAVFhTRVSIGMRFRMLFETEESSVRRYMGTITGTSDLDPLRWPNSHWRSVK 337 79******************************87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MKPSPAGSGQ QDEEGGEKRC LNSELWHACA GPLVCLPTVG TRVIYFPQGH SEQVAASTNK 60 EVEGHIPNYP SLPPQLMCQL HNVTMHADPE TDDVYAQMTL QPLSPEEQKN SYVPIEMGVA 120 SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIQRAN RPQTVMPSSV 240 LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RACPSEFVIP LSKYVKAVFH TRVSIGMRFR 300 MLFETEESSV RRYMGTITGT SDLDPLRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL 360 TTFPMYPSVF PLRLKRPWQP GLPFPQVFDN RGDESAALMW FGEVAREQGL PLMNFQSGMG 420 PWIQRVEPTM VGNELDLYQS VSAAALQDRS GDLKKQQLLQ YQQPFQFHFQ PCKSTSLLEQ 480 QFIQQTLPQK IFSPQLHVSE NQNDMLLQLH NEQQKQQPQA FEQVFQNPTE DMPHQQTPLV 540 SQLQQTLGFP DLSTDYLTVT TPSCLQSLIS SSCSEGSANV INPSRLRAPM TQHNQQIWEP 600 KIGIYEATLV NSAFSSYPDK GRSLETEKCS AGSHNDTAFG VSIDSHNLHP NAALNLTTSS 660 FVSDLPAEPY LASCFQNSLY GIPDKTSSLL QNSGEVDPPS KTFVKVYKAG SVGRSLDISR 720 FSSYNELREE LAQMFGVEGK IEDPLRSGWQ LVFVDRENDV LLLGDGPWEC

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MKPSPAGSGQ QDEEGGEKRC LNSELWHACA GPLVCLPTVG TRVIYFPQGH SEQVAASTNK  60
EVEGHIPNYP SLPPQLMCQL HNVTMHADPE TDDVYAQMTL QPLSPEEQKN SYVPIEMGVA  120
SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDLHDVEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIQRAN RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RACPSEFVIP LSKYVKAVFH TRVSIGMRFR  300
MLFETEESSV RRYMGTITGT SDLDPLRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYPSVF PLRLKRPWQP GLPFPQVFDN RGDESAALMW FGEVAREQGL PLMNFQSGMG  420
PWIQRVEPTM VGNELDLYQS VSAAALQDRS GDLKKQQLLQ YQQPFQFHFQ PCKSTSLLEQ  480
QFIQQTLPQK IFSPQLHVSE NQNDMLLQLH NEQQKQQPQA FEQVFQNPTE DMPHQQTPLV  540
SQLQQTLGFP DLSTDYLTVT TPSCLQSLIS SSCSEGSANV INPSRLRAPM TQHNQQIWEP  600
KIGIYEATLV NSAFSSYPDK GRSLETEKCS AGSHNDTAFG VSIDSHNLHP NAALNLTTSS  660
FVSDLPAEPY LASCFQNSLY GIPDKTSSLL QNSGEVDPPS KTFVKVYKAG SVGRSLDISR  720
FSSYNELREE LAQMFGVEGK IEDPLRSGWQ LVFVDRENDV LLLGDGPWEC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein