PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028556767.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 466aa MW: 50998 Da PI: 6.1304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028556767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.5e-09	287	335	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_028556767.1 287 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 335 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MDLGEKGKFG LEKRTVDSLN CNTTGLTTTE WNQIGSLPCP SASMVDSFGH VIWNQLPSNT 60 HNLSFSNAQA TASSSTIGKP VPMNWNPSDS LTKGGMFFST GMGMLPLSLS QFPCDAGFTE 120 RAARFSCFSD VAYPFIVPGS SDATAEAQMQ KNEADRIEAL KGRSGLIDQS SNSGSPMKEQ 180 REKGPNEFSE PEFSDDARDE SPNSSKGVFG INKRKRSNQD MESDQGQAAA QLPFEAAKDV 240 TDNKQKEEKN SSTMANVKPL GKNPKESGEA PKEDYIHVRA RRGQATNSHS LAERVRREKI 300 SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLAAVNP SIDFNIEGLL 360 SKDLFQTRTG SSSVIGFTPE MIHQQLHPPH QGLIQVGMAG VMNPSDAFRR ALNVQLASTS 420 GFKDSTQQMT NAWDEDLHNV VQMTYGNNPP LKTQDLNGAP RDGFPL

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MDLGEKGKFG LEKRTVDSLN CNTTGLTTTE WNQIGSLPCP SASMVDSFGH VIWNQLPSNT  60
HNLSFSNAQA TASSSTIGKP VPMNWNPSDS LTKGGMFFST GMGMLPLSLS QFPCDAGFTE  120
RAARFSCFSD VAYPFIVPGS SDATAEAQMQ KNEADRIEAL KGRSGLIDQS SNSGSPMKEQ  180
REKGPNEFSE PEFSDDARDE SPNSSKGVFG INKRKRSNQD MESDQGQAAA QLPFEAAKDV  240
TDNKQKEEKN SSTMANVKPL GKNPKESGEA PKEDYIHVRA RRGQATNSHS LAERVRREKI  300
SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF LSMKLAAVNP SIDFNIEGLL  360
SKDLFQTRTG SSSVIGFTPE MIHQQLHPPH QGLIQVGMAG VMNPSDAFRR ALNVQLASTS  420
GFKDSTQQMT NAWDEDLHNV VQMTYGNNPP LKTQDLNGAP RDGFPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-95	bHLH family protein