PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028557088.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 227aa    MW: 26434.1 Da    PI: 7.721
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028557088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.8e-2049135289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++Y++++GFsvr ++ ++  ++++ ++++fvCsk  +++  + +  +++ +++ tr gC a+++ + ++ g w+v+k+ ++HnH+l
  XP_028557088.1  49 AYCNYGQNLGFSVREDHYSYWPNSRNLKSKDFVCSKADFKKLPDLN-IQRKYQKSDTRAGCPAMIRFTVDEVGYWKVKKFIENHNHDL 135
                     59*****************************************999.999999*********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MALMKWLKGG LESEVAAIFG EITISVELGS CSSTECEDVY VNEKEAYEAY CNYGQNLGFS  60
VREDHYSYWP NSRNLKSKDF VCSKADFKKL PDLNIQRKYQ KSDTRAGCPA MIRFTVDEVG  120
YWKVKKFIEN HNHDLPRLED RRLLRSCRNV CDEKAYVLKA MTEAGIRTID AFSFLTYEVR  180
GVENIGFTRR DAYNFIQKIK RVKIEFGDTN TLIELFKERQ LNDNMFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-13FAR1 family protein