PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028557138.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HB-other
Protein Properties Length: 339aa    MW: 37095.4 Da    PI: 6.1854
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028557138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.7e-062773092254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     n+ ++++++++L +++gL+ +q+ +WF N+R +
  XP_028557138.1 277 NPSLQEDDKARLVQETGLQLKQINNWFINQRKR 309
                     88999**************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MAYHNHLAHE ISLPQFAEHH LGDQPAGIHL VHPASSNTGK PSGADASAAQ QLSGGLTWLN  60
SAILRPQGHQ FPDGRFLHLQ TSSEGHFRNG NDDVPVSSDS MIAAAMSDPA AAATGREGET  120
ATVGGDGGEQ QAVEGTWQNA RYKAEILAHP LYDQLLSAHV ACLRIATPVD QLPRIDAQLA  180
QTQRVIAKYS VLGAEQMISG EDKELDQFMT HYVLLLCSFK DQLQQHVRFH AMEAVMACWE  240
LEQSLQSLTG ELIIIAINSN SDFILDLLGS WCETLGNPSL QEDDKARLVQ ETGLQLKQIN  300
NWFINQRKRN WHSNPSSSST LKSKRKRNAG DNSPTAPSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307327RKRNWHSNPSSSSTLKSKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-66TALE family protein