PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028557214.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 661aa MW: 72290.8 Da PI: 6.4109

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028557214.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.4	1.6e-28	228	281	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl XP_028557214.1 228 KPRVVWSVELHQQFVNAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 281 79*****************.******************************8 PP
2	Myb_DNA-binding	41.4	3.4e-13	230	280	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v+av+qlG + +k+I + m+ g+t++++ s++qk++ XP_028557214.1 230 RVVWSVELHQQFVNAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 280 678**********************************************97 PP
3	Response_reg	79.1	1.5e-26	43	151	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+ +l+k +y +v++++++ +al ll+e++ +D+++ D+ mp+mdG++ll+ e++lp+i+++a g + + + +k G XP_028557214.1 43 VLVVDDDVTCLKILEHMLQKCRY-HVTTCSEALKALSLLRERKgsFDVVISDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIKHG 135 89*******************.***********999999***************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_028557214.1 136 ACDYLIKPVRIEELKN 151 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MAAIQKLSVQ NANAGGSYSS CRVDAGESTA LVAPELFPAG LRVLVVDDDV TCLKILEHML 60 QKCRYHVTTC SEALKALSLL RERKGSFDVV ISDVHMPDMD GFKLLELVGL EMDLPVIMMS 120 ADGRTSAVMR GIKHGACDYL IKPVRIEELK NIWQHVVRKK WNESKDVEHS GSFEDSDRQR 180 RVGDEAEYDS LVNEGTDGSW KTPKKKRDSK DDEEDGELEN EDPSASKKPR VVWSVELHQQ 240 FVNAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLKRISGVT QHQSALSNPF 300 CSPVEPNTKV GSLGRLDFHS LTATGQIPPQ TLAVLHAELL GRPSGNVVLP VIDSPILLQA 360 SSQNSKFLPV EKEIAFGQPL FQCQSGISKP FPPSGINSQD VPSSFSSWPS NQLGVTGSNS 420 ELGDISNTQN NNLLMQMLQH QQEPFNLVVS ESHNAINVRP SCLVVPTQLP NNLNGGNCSM 480 PVNKNSMPNN VPLSMGRVAD GDFKKIGLLS SYSTPASVSS PSVSSGSVCT NGGAGWRLHN 540 SNMNFDSLNR SPGHLPNLCI PGTEVKSGTS VNYEHARNLG FVGKGTCLPS RFAVDDIESP 600 TNDWNNIKTS VFDDVDKVKQ ELNLDFLEGS KVEKTMLPTF PSNDFMGVLS KDSQARCFLK 660 S

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MAAIQKLSVQ NANAGGSYSS CRVDAGESTA LVAPELFPAG LRVLVVDDDV TCLKILEHML  60
QKCRYHVTTC SEALKALSLL RERKGSFDVV ISDVHMPDMD GFKLLELVGL EMDLPVIMMS  120
ADGRTSAVMR GIKHGACDYL IKPVRIEELK NIWQHVVRKK WNESKDVEHS GSFEDSDRQR  180
RVGDEAEYDS LVNEGTDGSW KTPKKKRDSK DDEEDGELEN EDPSASKKPR VVWSVELHQQ  240
FVNAVNQLGI DKAVPKRILE LMNVPGLTRE NVASHLQKFR LYLKRISGVT QHQSALSNPF  300
CSPVEPNTKV GSLGRLDFHS LTATGQIPPQ TLAVLHAELL GRPSGNVVLP VIDSPILLQA  360
SSQNSKFLPV EKEIAFGQPL FQCQSGISKP FPPSGINSQD VPSSFSSWPS NQLGVTGSNS  420
ELGDISNTQN NNLLMQMLQH QQEPFNLVVS ESHNAINVRP SCLVVPTQLP NNLNGGNCSM  480
PVNKNSMPNN VPLSMGRVAD GDFKKIGLLS SYSTPASVSS PSVSSGSVCT NGGAGWRLHN  540
SNMNFDSLNR SPGHLPNLCI PGTEVKSGTS VNYEHARNLG FVGKGTCLPS RFAVDDIESP  600
TNDWNNIKTS VFDDVDKVKQ ELNLDFLEGS KVEKTMLPTF PSNDFMGVLS KDSQARCFLK  660
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-118	ARR-B family protein