PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028557256.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family LBD
Protein Properties Length: 226aa    MW: 24661.8 Da    PI: 6.3433
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028557256.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.7e-44291281100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrrkC ++C++apyfp e+p+kfa vhk+FGasnv+kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+
  XP_028557256.1  29 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFASVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVQRLQKELD 123
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++++
  XP_028557256.1 124 AANAN 128
                     98865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MLQLTEEETN NELYAAMASS SSSSSSNSPC AACKFLRRKC MPGCIFAPYF PPEEPQKFAS  60
VHKIFGASNV TKLLNELLPH QREDAVNSLA YEAEARMKDP VYGCVGAISV LQRQVQRLQK  120
ELDAANANLL RYACSEIPSA LPITTVPSPV VLGGYQRLDY ERGPVVAASN VNRDCNGSGS  180
YFQPLTHAGL HQVLLPYHSS LQWSSISGNQ QLKENGGDGY GDMDRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.22e-68LBD family protein