PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1007
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 245aa    MW: 27199.8 Da    PI: 5.9298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1007genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-0978125454
                                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    ++  rE+ RR+r+N++f +L ++l ++   + ++ +K++iL  A + + +L
  evm.model.AsparagusV1_01.1007  78 SKACREKMRRERLNDRFLQLSSVLDPD---RPPRSDKVSILGDAARLLMQL 125
                                    6789**********************9...99************9999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDPSPISDYW IDWIDDVGVG SDVDLRSALE TFCDISPANG YFRSTSVRSP EEYGGGCGVD  60
PTGSKKRGRD DACPGPKSKA CREKMRRERL NDRFLQLSSV LDPDRPPRSD KVSILGDAAR  120
LLMQLKTEAE QLKESNEKLE ETIKELKVEK NELRDEKTKL KADKERLEQQ LKAMSPPPPA  180
FMPHPMALHP AAASANAAFV AQQPQASSKA AAPYNAFPRM TMWQWLPPTV LDTTQDTKLW  240
SPNA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.14e-45bHLH family protein