PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1032
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 161aa    MW: 18862.3 Da    PI: 6.9482
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1032genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.91.4e-1762149190
                           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                                    +fYneYA++  Fs+r+++     ++g  t+rtfvC keg r+ +k++  +  r+  et t+  a + +k+ + ++k  v+
  evm.model.AsparagusV1_01.1032  62 DFYNEYARSEDFSIRRDAYAAD-KQGVLTSRTFVCCKEGLRKADKRD--DLTRNPRETMTNYGAIMGIKLVRrTDKNSVY 138
                                    6***************987666.8899****************9999..7777888999***********999******* PP

                           FAR1  80 kleleHnHela 90 
                                    ++++eH H+l 
  evm.model.AsparagusV1_01.1032 139 RFSEEHKHPLI 149
                                    *********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
MNRSSLISFS QARWWRDGIL VLIVLVIMEE PVEENNSSLE RSKEDLKPKF FMEFDYEIAA  60
FDFYNEYARS EDFSIRRDAY AADKQGVLTS RTFVCCKEGL RKADKRDDLT RNPRETMTNY  120
GAIMGIKLVR RTDKNSVYRF SEEHKHPLIS QESVHFMSSH *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-11FAR1 family protein