PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.1050

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

WOX

Protein Properties

Length: 261aa MW: 28958.2 Da PI: 7.0598

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.1050	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.6e-21	99	159	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ evm.model.AsparagusV1_01.1050 99 RQRWTPTPIQLQILESIFDQgNGTPSKQKIKEITNELtqhgQISETNVYNWFQNRRARSKR 159 89***************99************************************97 PP
2	Wus_type_Homeobox	101.1	8.2e-33	98	161	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq evm.model.AsparagusV1_01.1050 98 ARQRWTPTPIQLQILESIFDQGNGTPSKQKIKEITNELTQHGQISETNVYNWFQNRRARSKRKQ 161 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
METQNPSPSP SPSAVKTNAV NGSNRERSLG DGALYVKVMT DEQMEVLRRQ ISVYASICEQ 60 LVEMHKAVTA HNDSIAGMRL GNLYCDPLMS TGGHKIAARQ RWTPTPIQLQ ILESIFDQGN 120 GTPSKQKIKE ITNELTQHGQ ISETNVYNWF QNRRARSKRK QMTNASNYPE SEAEGENESP 180 KEKKAKLHNG DDSSYNNTPQ DPKRIQGVSP SNSKSSGSLG QMSFYENILS NPRMDQLMGK 240 MEVPGSYSPF ESAESYDFMG *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	161	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-74	WOX family protein