PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.107
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 231aa    MW: 25494.2 Da    PI: 5.8293
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.107genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.68.2e-08137197266
                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 
                                   +Y+++Ake GF v k++s k  ++g + +  ++Csk gk++ + ++     +tr++t+++  a+l
  evm.model.AsparagusV1_01.107 137 YYSRFAKEKGFVVAKRSSGKG-KDGVVRHVILQCSKGGKARARGSN---PIKTRPQTKVDSPAHL 197
                                   8***************99997.8999****************9988...7777777777777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MASASILTKE DMASASISSP SNPPHSPESS HHDLSNPSNI VLSSQSHRDE SLVRGNNDLG  60
QSHVQGDNNP EKAMFDLMLW SGDHGEEEEV LSGFSKEGTD EINTNEDGNE AMKNCEERVE  120
EPDVGMEFNT PNEAYLYYSR FAKEKGFVVA KRSSGKGKDG VVRHVILQCS KGGKARARGS  180
NPIKTRPQTK VDSPAHLKEM EFYLPNIAQI YMTRNKFDEK EDHGLKGRKV *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-06FAR1 family protein