PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1238
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 223aa    MW: 25135.3 Da    PI: 6.1365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1238genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.7e-121463148
                                   TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT+eEde+lv       +g  +W+ +++  g++R++k+c++rw +yl
  evm.model.AsparagusV1_01.1238 14 KGPWTAEEDEKLVGFMMSENSGhcSWRMVPKLAGLRRCGKSCRLRWTNYL 63
                                   79***********98887777778************************97 PP
2Myb_DNA-binding47.63.8e-1573112546
                                    -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    ++ E++l +d++ +lG++ W+ Ia++++ gRt++++k++w++
  evm.model.AsparagusV1_01.1238  73 SELEEQLVIDLHSRLGNR-WSQIAAKLP-GRTDNEIKNHWNT 112
                                    677***************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGRRPCCDKL GVKKGPWTAE EDEKLVGFMM SENSGHCSWR MVPKLAGLRR CGKSCRLRWT  60
NYLRPDLKRG LLSELEEQLV IDLHSRLGNR WSQIAAKLPG RTDNEIKNHW NTNIKKKLIK  120
MGIDPITHQP LIKQESIKTT NSTEVEAPAE AQTSSSENTC QVENCSNSEN NSSDLLASSI  180
WEVGLQFEDA SYGKWASPWD DSCDWLTDYQ ELGTVDFGKD SL*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.16e-80MYB family protein