PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1472
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family bHLH
Protein Properties Length: 160aa    MW: 18351.3 Da    PI: 8.9871
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1472genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-165196555
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                            HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                   hn+ Er+RRdriN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  evm.model.AsparagusV1_01.1472 51 HNQSERKRRDRINQKIRTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 96
                                   *************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MVVADEHDSV CHSRRSLSQR GMAGEEDEKV IEECTVRSTV STKRSRAAAI HNQSERKRRD  60
RINQKIRTLQ KLVPNSNKTD KASMLDEVIE YLKQLQAQIS MMSRMSSMAP PMLMPMGMQQ  120
FQMSMMAQMA QMGLAGMGMM DMGSMGRDWK CWWWWCEYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560ERKRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-37bHLH family protein