PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.1498

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 487aa MW: 55168.7 Da PI: 6.6786

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.1498	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.2	1.8e-15	131	214	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 +++++YA +vGF v ++ks+ + ++g + + + Csk g+ +++ + r + +t+C+ ++ k + dg ++ + evm.model.AsparagusV1_01.1498 131 NYFKQYALRVGFGVAVKKSSFT-KKGVCRRLVLACSKGGTGRSDAMY-----QARRTAKTNCEVMISAKSRGDGLLHLVD 204 59*************99998.7788***********99988.....889999****************** PP FAR1 81 leleHnHela 90 ++leHnH+++ evm.model.AsparagusV1_01.1498 205 VKLEHNHPVN 214 *****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MTDSSSLNTE NIGDCRIGEE KGIETDRMTT GSILQDVSHF GDNNITEVKE NKENETTVEN 60 DKATQEIAND LKECPQKRDR EVIILDDEDD HSTDAKRSIE DELSRNPNIN GKNEKTPRVG 120 LVFTSYDELN NYFKQYALRV GFGVAVKKSS FTKKGVCRRL VLACSKGGTG RSDAMYQARR 180 TAKTNCEVMI SAKSRGDGLL HLVDVKLEHN HPVNPATARH VLSVFKFQQI FEIPSHYILD 240 RWKKDFKQLH AMARSSDDAV VNNLPERYDY LSSRFLQLVD VGFISEDRYR LSLKLIKEIE 300 KSLLDDTSGR DNQPKLLCFD THSNQNVQNL LVSQLGFTED NANSNSNLLP VKRRGRPPKK 360 GRVCNVEPLV RTNKEQDFLR SAMIANEDNV LQAAPTVSHL DTHIGQGGIN LMEDLNPNDL 420 SFGTHFDLHV NQQHHMNSQP RLQSNNLLQG QYDQQTMVNQ NGFPWIYQQI LQEDQISKVP 480 SVRRTG*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MTDSSSLNTE NIGDCRIGEE KGIETDRMTT GSILQDVSHF GDNNITEVKE NKENETTVEN  60
DKATQEIAND LKECPQKRDR EVIILDDEDD HSTDAKRSIE DELSRNPNIN GKNEKTPRVG  120
LVFTSYDELN NYFKQYALRV GFGVAVKKSS FTKKGVCRRL VLACSKGGTG RSDAMYQARR  180
TAKTNCEVMI SAKSRGDGLL HLVDVKLEHN HPVNPATARH VLSVFKFQQI FEIPSHYILD  240
RWKKDFKQLH AMARSSDDAV VNNLPERYDY LSSRFLQLVD VGFISEDRYR LSLKLIKEIE  300
KSLLDDTSGR DNQPKLLCFD THSNQNVQNL LVSQLGFTED NANSNSNLLP VKRRGRPPKK  360
GRVCNVEPLV RTNKEQDFLR SAMIANEDNV LQAAPTVSHL DTHIGQGGIN LMEDLNPNDL  420
SFGTHFDLHV NQQHHMNSQP RLQSNNLLQG QYDQQTMVNQ NGFPWIYQQI LQEDQISKVP  480
SVRRTG*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	2e-12	FAR1 family protein