PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.162

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 433aa MW: 47387.7 Da PI: 6.8894

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.162	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.8	5.1e-10	50	73	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++rtG C yG++C+++H+ evm.model.AsparagusV1_01.162 50 APDCIYYLRTGLCGYGGNCRYNHP 73 589********************8 PP
2	zf-CCCH	37.6	3.6e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtCk+G++Ck++H++ evm.model.AsparagusV1_01.162 92 QPDCQYFLKTGTCKFGATCKYHHPQ 116 789********************97 PP
3	zf-CCCH	32.2	1.8e-10	138	161	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H+p evm.model.AsparagusV1_01.162 138 KSCPYYMRTGSCKFGFACKFNHPP 161 66********************97 PP
4	zf-CCCH	40.2	5.6e-13	277	302	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+CkyG++Ck++H++ evm.model.AsparagusV1_01.162 277 DQPECQHYMKTGICKYGETCKYHHPK 302 689*********************96 PP
5	zf-CCCH	30.6	5.8e-10	324	346	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++ +G C+yG+ CkF H+ evm.model.AsparagusV1_01.162 324 GICTFYSVYGSCRYGSACKFDHP 346 58********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MQDHSEFQSN AVSSSSNASP ENLEDAIWKL KLEENNQVGN QNPYPDRPGA PDCIYYLRTG 60 LCGYGGNCRY NHPNYNGQGT QDRGELPERV GQPDCQYFLK TGTCKFGATC KYHHPQERYD 120 LQPAPLNILG LPMRQDEKSC PYYMRTGSCK FGFACKFNHP PPATLGPVFS VGPSAYGSTG 180 PYVAPPSSLP FIGGLSAWPS ARPYLPSSRM QDLPAYMPVF LPSSQGTIPV QQGWATYMGH 240 ASQIPSTEVL GPTQVSNTNL HAQSSSSTVI NLPERPDQPE CQHYMKTGIC KYGETCKYHH 300 PKERYLESSI TLGPSGLPLR PGHGICTFYS VYGSCRYGSA CKFDHPVMGS YDYAMPAHFP 360 SSQSNLPLQV TWASTPEAPS SKTSKLTDQI KKSSEKNNVE ENVASDNQNE HVTVPPSTNT 420 EASSDSSQIH SN*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MQDHSEFQSN AVSSSSNASP ENLEDAIWKL KLEENNQVGN QNPYPDRPGA PDCIYYLRTG  60
LCGYGGNCRY NHPNYNGQGT QDRGELPERV GQPDCQYFLK TGTCKFGATC KYHHPQERYD  120
LQPAPLNILG LPMRQDEKSC PYYMRTGSCK FGFACKFNHP PPATLGPVFS VGPSAYGSTG  180
PYVAPPSSLP FIGGLSAWPS ARPYLPSSRM QDLPAYMPVF LPSSQGTIPV QQGWATYMGH  240
ASQIPSTEVL GPTQVSNTNL HAQSSSSTVI NLPERPDQPE CQHYMKTGIC KYGETCKYHH  300
PKERYLESSI TLGPSGLPLR PGHGICTFYS VYGSCRYGSA CKFDHPVMGS YDYAMPAHFP  360
SSQSNLPLQV TWASTPEAPS SKTSKLTDQI KKSSEKNNVE ENVASDNQNE HVTVPPSTNT  420
EASSDSSQIH SN*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-92	C3H family protein