PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1829
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 192aa    MW: 20788.2 Da    PI: 8.3671
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1829genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.62.4e-147196126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                   +kt++C+ +  tG+C++G++C+FaHg
  evm.model.AsparagusV1_01.1829 71 WKTRICNKWEMTGYCPFGSKCHFAHG 96
                                   8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MLVGEGQRSY KGRHCKKFYT EEGCPYGDMC TFLHDEQSKA RESVAISLSP TVGGGGYGTA  60
ANGSSQKPSN WKTRICNKWE MTGYCPFGSK CHFAHGAAEL HRYGGGLVET DGRDITSAAT  120
DSKQAGASVK AHSDVVVASN TSIPHPDVYH MGVPAQRTAV GSQRQGQRPF QKWKGPDKIS  180
RIYGDWLEDL E*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-69C3H family protein