PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1830
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 145aa    MW: 15573.1 Da    PI: 6.4994
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1830genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-0899124127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                    +kt+lC+ f++ GtC+y  +C+FaHg+
  evm.model.AsparagusV1_01.1830  99 FKTKLCCKFRA-GTCPYITNCNFAHGM 124
                                    69*********.*************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MDYGGRYSGS NAIEIIPEAS STGGSNAWMP PSNDQSIWAT EDDYQVWNAE PSSDSISNFS  60
QSRAGSEQPP SKKSRGSSQN DAQLNGSTSK SKAIGKMFFK TKLCCKFRAG TCPYITNCNF  120
AHGMEELRPP PPNWQEIVAA HGGT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.19e-43C3H family protein