PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_01.1945

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

GeBP

Protein Properties

Length: 236aa MW: 26809.1 Da PI: 9.3003

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_01.1945	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	53.8	5.3e-17	68	160	2	96
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkep 78 +f +w+ eDei +L G+i+ k+k+g +++ i + + + sisf ++ +ql +Kir+LK + k ++ k + evm.model.AsparagusV1_01.1945 68 NFAGIWTREDEIKILEGIIEHKKKNGGeipKATPSIRTLLSAIAPSISFAATVRQLQDKIRHLKAGYDKASDS----K-K 142 57889*****************99876667779*****************************99998....3.4 PP DUF573 79 sfskehdqkifelskkiW 96 ++ h + ++ l+ +iW evm.model.AsparagusV1_01.1945 143 PQATGHKEIVYRLCDRIW 160 456788899******* PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MPPNPQDRRN PSPRSTPDPE EEGGGRMWER RRAPTSPNPA PSTSQIIPRS NQESTSNNNR 60 KKKKPTANFA GIWTREDEIK ILEGIIEHKK KNGGEIPKAT PSIRTLLSAI APSISFAATV 120 RQLQDKIRHL KAGYDKASDS KKPQATGHKE IVYRLCDRIW PASPATKEEG EGHSFYDSDD 180 YPELRIAVER RAGYLIFEEI VESLNKDEAE SFNARFLKLR EDEKELWKEI HERLL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	91	KKKKPTANFAGIWTREDEIKILEGIIEHKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-08	GeBP family protein