PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.195
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family C3H
Protein Properties Length: 224aa    MW: 25969.3 Da    PI: 11.7982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.195genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-0696119226
                                   -S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                   +++ Cr f +   C++G+ C+F+H+
  evm.model.AsparagusV1_01.195  96 REATCRQFEE-DSCNRGGYCNFMHV 119
                                   6789**9999.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MVTGVHGFIT APRSLLPSYF PTCTNALIVS PLVWTPRARL LTLPRSKNTL RISMKISLKN  60
SFKEEDQAAA ALRALQGRFY SGRPIIADFS PVTDFREATC RQFEEDSCNR GGYCNFMHVK  120
QIGRELRKKL FGRYRKSHGR RSRSRSRSPR RRDYRDNGDY RRGGGGRSGG RHGXXXXHGR  180
YHNDRDRRRE ASPRRARSPV REGSEERRAR IEQWNREREE KGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143152RSRSRSPRRR