PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.1989
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 260aa    MW: 29433.8 Da    PI: 6.5278
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.1989genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1773.7e-2489177190
                           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                                    +fYneYA++ GFs+r+++     ++g   +r fvC keg r+ +k++ + +r++r etrt+C a + +++ + +gk+ ++
  evm.model.AsparagusV1_01.1989  89 DFYNEYARSEGFSIRREAYAAD-KQGVLSSRIFVCCKEGLRKADKRD-DLTRNPRGETRTNCGAIMGINLVRrTGKYSIY 166
                                    6***************987666.8899*****************999.9*********************999******* PP

                           FAR1  80 kleleHnHela 90 
                                    ++++eHnH+l 
  evm.model.AsparagusV1_01.1989 167 RFSEEHNHPLI 177
                                    *********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGGLKVEDEL DGEIAEEEGL GSQGRERLVG GDGRSAKRIQ QIEGQSWGHK RQSIMEELVE  60
ESNDSLERSK EDLKPKFFRE FNSEIAAYDF YNEYARSEGF SIRREAYAAD KQGVLSSRIF  120
VCCKEGLRKA DKRDDLTRNP RGETRTNCGA IMGINLVRRT GKYSIYRFSE EHNHPLINQE  180
SIHFMPSHRK ITSSDEAFLD LTANSGHSSN SAFELMGQQA GGRESLGFIM VDQKNYLGTI  240
RQKKMKFGEA GYLIEYFSK*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-25FAR1 family protein