PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_01.2093
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 340aa    MW: 38322.2 Da    PI: 7.4162
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_01.2093genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-22145236290
                           FAR1   2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwev 78 
                                    fY++YA ++GF +r+++s++++r+g    ++++fvC keg+++++ ++ t k++r+r + r gC a+++v ++  +kw+v
  evm.model.AsparagusV1_01.2093 145 FYHAYALRLGFGIRVARSRRERRKGveVLVMKRFVCLKEGHHKKKVTDhTPKKKRKRLSIRDGCPAMMEVVRRGPDKWVV 224
                                    9******************997765225789***********999888577888999*********************** PP

                           FAR1  79 tkleleHnHela 90 
                                    tkl+l+H+H ++
  evm.model.AsparagusV1_01.2093 225 TKLVLDHTHIVV 236
                                    *********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MWSETAVIAS VVGDDCRHER GWRLGSRARS EAGASVVGGV ARSVVVGLRD LENGHGLEIM  60
EYSSSEDDEL IDHYVDLEDD IPISDVDQRS NEVTVPLHFL EHGENSMAAV SNTIGSDLLS  120
TDGDVKNIDP YLNMEFESDS AARAFYHAYA LRLGFGIRVA RSRRERRKGV EVLVMKRFVC  180
LKEGHHKKKV TDHTPKKKRK RLSIRDGCPA MMEVVRRGPD KWVVTKLVLD HTHIVVSPER  240
IREIQYNRLT EHYILRRWTR KAKTGIGSDD RSSEVRNYSQ TSSMARYSEL FNDAIKFAEK  300
GSTSPESYKI AKEMLQKAFA EIVGLEESVI NADTNIGRN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163200RRERRKGVEVLVMKRFVCLKEGHHKKKVTDHTPKKKRK
2187201KKKVTDHTPKKKRKR
3195202PKKKRKRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.25e-19FAR1 family protein